Welcome to BIA Integrator’s documentation!

Contents:

• BIA Integrator: purpose
• Setup
  • Setting up an environment for converting images
• Core primitives
  • Study
  • Image
  • Image Representation
  • Annotation
• Image conversion
  • Conversion overview
  • Conversion stages
• Worked examples
  • Ingest and zip file extraction
  • Converting and squeezing an EMPIAR entry image
• Ingesting and converting from BioStudies
  • Ingest from BioStudies
  • Conversion
• Staging zipped Zarr files to S3

Indices and tables

• Index

• Module Index

• Search Page